ND Genotypes
Categories
Component ID
1469344
Component name
ND Genotypes
Component type
module
Maintenance status
Development status
Component security advisory coverage
covered
Downloads
383
Component created
Component changed
Component body
Module Description
This module provides a more specialized interface to genotypic information
stored in the chado natural diversity module tables including adding summaries
of this information to feature pages and providing a powerful marker by germplasm
matrix.
Features
- Adds specialized panes to marker and variant features to better display/summarize genotypic data.
- "Genotypes" pane with genotype distribution pie chart (HighCharts module needed).
- "Sequences" pane which displays a region of the parent sequence for a marker with any known variants highlighted by their IUPAC wobble code to aid new marker design.
- Provides a search view displaying all the genotypes for a given stock in a marker (rows) by stock (columns) table. The user can indicate which stocks/germplasm they want to see and there is no set number of germplasm they can add.
Installation Instructions
- Install this module as you would any other Drupal module (Drupal Documentation)
- Make sure to run all Tripal jobs queued by module installation.
NOTE: Additional instruction/details for module setup and administration can be found in the in-module help (click the Help link in the module list; admin/tripal/extension/nd_genotypes/help)
Requirements
- Drupal 7.x
- Tripal 2.x